/*   Copyright (C) 2011 Wolfgang Hankeln, Norma J. Wendel
 *
 *   This file is part of CDinFusion.
 *
 *   CDinFusion is free software: you can redistribute it and/or
 *   modify it under the terms of the GNU Lesser General Public 
 *   License in version 3 (LGPL3) as published by the Free Software
 *   Foundation version 3 of the License.
 *
 *   CDinFusion is distributed in the hope that it will be useful,
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 *   Lesser General Public License for more details.
 *
 *   You should have received a copy of the Lesser General Public
 *   License along with CDinFusion; see the file COPYING. If not,
 *   write to the Free Software Foundation, 59 Temple Place - Suite 330,
 *   Boston, MA 02111-1307, USA or see <http://www.gnu.org/licenses/>.
 *   
 *   If you have any questions, send an email to: megx@mpi-bremen.de.
 */
package org.cdinfusion.data.studytype.generators;

import org.cdinfusion.data.studytype.StudyType;
import org.cdinfusion.data.studytype.VI;

public final class VIFastaHeaderGeneratorForStudyType extends
		AbstractFastaHeaderGeneratorForStudyType {

	public String generateFastaHeader(final StudyType type) {

		final VI vi = (VI) type;
		final StringBuilder optional = new StringBuilder(100);

		if (vi.getCollection_date().length() > 0) {
			optional.append(" [collection-date=");
			writeDate(vi.getCollection_date(), optional);
			optional.append("]");
		}
		optional.append(" [biovar=virus] [chemovar=virus]");
		if (vi.getLat_lon().length() > 0) {
			optional.append(" [lat_lon=");
			optional.append(vi.getLat_lon());
			optional.append("]");
		}
		
		return optional.toString();
	}
}
